IL_9BDP_256

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UCCC*GUCA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDP_256 not in the Motif Atlas

Geometric match to IL_5TBW_128

Geometric discrepancy: 0.2237

The information below is about IL_5TBW_128

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

9BDP|1|A28S|U|4885
9BDP|1|A28S|C|4886
9BDP|1|A28S|C|4887
9BDP|1|A28S|C|4888
*
9BDP|1|A28S|G|4931
9BDP|1|A28S|U|4932
9BDP|1|A28S|C|4933
9BDP|1|A28S|A|4934

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL06

60S ribosomal protein L6