IL_9BDP_272

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

9BDP|1|A5S|U|84

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDP_272 not in the Motif Atlas

Homologous match to IL_8C3A_149

Geometric discrepancy: 0.1014

The information below is about IL_8C3A_149

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

9BDP|1|A5S|G|82
9BDP|1|A5S|A|83
9BDP|1|A5S|U|84
9BDP|1|A5S|G|85
*
9BDP|1|A5S|C|92
9BDP|1|A5S|G|93
9BDP|1|A5S|C|94

Current chains

Chain A5S

5S rRNA

Nearby chains

Chain A28S

Large subunit ribosomal RNA; LSU rRNA

Chain AL07

60S ribosomal protein L7

Chain AL10

Ribosomal protein L10

Chain AL20

60S ribosomal protein L18a