IL_9BDP_316

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

9BDP|1|A28S|G|3839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDP_316 not in the Motif Atlas

Homologous match to IL_8C3A_083

Geometric discrepancy: 0.1117

The information below is about IL_8C3A_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

9BDP|1|A28S|A|2850
9BDP|1|A28S|G|2851
9BDP|1|A28S|U|2852
9BDP|1|A28S|C|2853
9BDP|1|A28S|G|2854
9BDP|1|A28S|G|2855
*
9BDP|1|A28S|C|3837
9BDP|1|A28S|U|3838
9BDP|1|A28S|G|3839
9BDP|1|A28S|U|3840

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL03

60S ribosomal protein L3

Chain AL23

60S ribosomal protein L23