IL_9BDP_342

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GACC*GC

Length

6 nucleotides

Bulged bases

9BDP|1|A28S|C|4349

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDP_342 not in the Motif Atlas

Geometric match to IL_9DFE_057

Geometric discrepancy: 0.3061

The information below is about IL_9DFE_057

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

9BDP|1|A28S|G|4347
9BDP|1|A28S|A|4348
9BDP|1|A28S|C|4349
9BDP|1|A28S|C|4350
*
9BDP|1|A28S|G|4364
9BDP|1|A28S|C|4365

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL13

Large ribosomal subunit protein eL13

Chain AL18

Large ribosomal subunit protein eL18

Chain AL28

60S ribosomal protein L27a

Chain AL42

eL42