IL_9BH5_005
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- CUGAACUU*AUCAUUUAG
- Length
- 17 nucleotides
- Bulged bases
- 9BH5|1|A5|U|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BH5_005 not in the Motif Atlas
- Geometric match to IL_5TBW_005
- Geometric discrepancy: 0.112
- The information below is about IL_5TBW_005
- Detailed Annotation
- tSH-tHW-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_35728.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
9BH5|1|A5|C|30
9BH5|1|A5|U|31
9BH5|1|A5|G|32
9BH5|1|A5|A|33
9BH5|1|A5|A|34
9BH5|1|A5|C|35
9BH5|1|A5|U|36
9BH5|1|A5|U|37
*
9BH5|1|A5|A|44
9BH5|1|A5|U|45
9BH5|1|A5|C|46
9BH5|1|A5|A|47
9BH5|1|A5|U|48
9BH5|1|A5|U|49
9BH5|1|A5|U|50
9BH5|1|A5|A|51
9BH5|1|A5|G|52
Current chains
- Chain A5
- 28S rRNA
Nearby chains
- Chain CL
- Large ribosomal subunit protein eL13
- Chain CN
- Large ribosomal subunit protein eL15
- Chain Ca
- Large ribosomal subunit protein uL15
- Chain Cj
- Ribosomal protein L37
- Chain Co
- Large ribosomal subunit protein eL42
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