IL_9BH5_007

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CGAA*UG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_007 not in the Motif Atlas

Geometric match to IL_1G1X_004

Geometric discrepancy: 0.1797

The information below is about IL_1G1X_004

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

9BH5|1|A5|C|118
9BH5|1|A5|G|119
9BH5|1|A5|A|120
9BH5|1|A5|A|121
*
9BH5|1|A5|U|150
9BH5|1|A5|G|151

Current chains

Chain A5

28S rRNA

Nearby chains

Chain CG

Large ribosomal subunit protein eL8

Chain CN

Large ribosomal subunit protein eL15

Chain Ch

Large ribosomal subunit protein uL29