IL_9BH5_009
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- AUC*GCUU
- Length
- 7 nucleotides
- Bulged bases
- 9BH5|1|A5|C|140
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BH5_009 not in the Motif Atlas
- Homologous match to IL_8C3A_008
- Geometric discrepancy: 0.4305
- The information below is about IL_8C3A_008
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
9BH5|1|A5|A|125
9BH5|1|A5|U|126
9BH5|1|A5|C|127
*
9BH5|1|A5|G|139
9BH5|1|A5|C|140
9BH5|1|A5|U|141
9BH5|1|A5|U|142
Current chains
- Chain A5
- 28S rRNA
Nearby chains
- Chain A8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CG
- Large ribosomal subunit protein eL8
- Chain CN
- Large ribosomal subunit protein eL15
- Chain CX
- Large ribosomal subunit protein uL23B
- Chain Ch
- Large ribosomal subunit protein uL29
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