IL_9BH5_014

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

9BH5|1|A5|U|193

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_014 not in the Motif Atlas

Homologous match to IL_8C3A_013

Geometric discrepancy: 0.1877

The information below is about IL_8C3A_013

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

9BH5|1|A5|G|192
9BH5|1|A5|U|193
9BH5|1|A5|C|194
*
9BH5|1|A5|G|207
9BH5|1|A5|C|208

Current chains

Chain A5

28S rRNA

Nearby chains

Chain CC

Large ribosomal subunit protein uL4

Chain CY

Large ribosomal subunit protein uL24