IL_9BH5_017
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- GUGAAAU*AUGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BH5_017 not in the Motif Atlas
- Homologous match to IL_5TBW_015
- Geometric discrepancy: 0.0979
- The information below is about IL_5TBW_015
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
9BH5|1|A5|G|410
9BH5|1|A5|U|411
9BH5|1|A5|G|412
9BH5|1|A5|A|413
9BH5|1|A5|A|414
9BH5|1|A5|A|415
9BH5|1|A5|U|416
*
9BH5|1|A8|A|13
9BH5|1|A8|U|14
9BH5|1|A8|G|15
9BH5|1|A8|G|16
9BH5|1|A8|A|17
9BH5|1|A8|U|18
9BH5|1|A8|C|19
Current chains
- Chain A5
- 28S rRNA
- Chain A8
- 5.8S rRNA
Nearby chains
- Chain CC
- Large ribosomal subunit protein uL4
- Chain CP
- Large ribosomal subunit protein uL22
- Chain Ce
- Large ribosomal subunit protein eL32
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