IL_9BH5_018

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CAG*CGACG

Length

8 nucleotides

Bulged bases

9BH5|1|A5|C|656

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_018 not in the Motif Atlas

Geometric match to IL_8VTW_081

Geometric discrepancy: 0.3092

The information below is about IL_8VTW_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

9BH5|1|A5|C|437
9BH5|1|A5|A|438
9BH5|1|A5|G|439
*
9BH5|1|A5|C|653
9BH5|1|A5|G|654
9BH5|1|A5|A|655
9BH5|1|A5|C|656
9BH5|1|A5|G|657

Current chains

Chain A5

28S rRNA

Nearby chains

Chain A8

5.8S ribosomal RNA; 5.8S rRNA

Chain Ce

Large ribosomal subunit protein eL32

Chain Cf

Large ribosomal subunit protein eL33