IL_9BH5_028

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CUA*UUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_028 not in the Motif Atlas

Homologous match to IL_8C3A_023

Geometric discrepancy: 0.2189

The information below is about IL_8C3A_023

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

9BH5|1|A5|C|698
9BH5|1|A5|U|699
9BH5|1|A5|A|700
*
9BH5|1|A5|U|846
9BH5|1|A5|U|847
9BH5|1|A5|G|848

Current chains

Chain A5

28S rRNA

Nearby chains

Chain CC

Large ribosomal subunit protein uL4

Chain CN

Large ribosomal subunit protein eL15

Chain CQ

Large ribosomal subunit protein eL18

Chain Ca

Large ribosomal subunit protein uL15