IL_9BH5_031

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

9BH5|1|A5|A|835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_031 not in the Motif Atlas

Homologous match to IL_5TBW_024

Geometric discrepancy: 0.1461

The information below is about IL_5TBW_024

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

9BH5|1|A5|C|807
9BH5|1|A5|C|808
*
9BH5|1|A5|G|834
9BH5|1|A5|A|835
9BH5|1|A5|G|836

Current chains

Chain A5

28S rRNA

Nearby chains

Chain CQ

Large ribosomal subunit protein eL18

Chain Ca

Large ribosomal subunit protein uL15