IL_9BH5_033

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CCG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_033 not in the Motif Atlas

Homologous match to IL_8C3A_029

Geometric discrepancy: 0.0604

The information below is about IL_8C3A_029

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

9BH5|1|A5|C|858
9BH5|1|A5|C|859
9BH5|1|A5|G|860
*
9BH5|1|A5|C|993
9BH5|1|A5|U|994
9BH5|1|A5|G|995

Current chains

Chain A5

28S rRNA

Nearby chains

Chain CC

Large ribosomal subunit protein uL4

Chain Ca

Large ribosomal subunit protein uL15