IL_9BH5_035

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GC*GAC

Length

5 nucleotides

Bulged bases

9BH5|1|A5|A|951

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_035 not in the Motif Atlas

Geometric match to IL_7A0S_016

Geometric discrepancy: 0.0973

The information below is about IL_7A0S_016

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

9BH5|1|A5|G|883
9BH5|1|A5|C|884
*
9BH5|1|A5|G|950
9BH5|1|A5|A|951
9BH5|1|A5|C|952

Current chains

Chain A5

28S rRNA

Nearby chains

Chain CA

Large ribosomal subunit protein uL2

Chain Cg

Large ribosomal subunit protein eL34