IL_9BH5_037

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GGUU*AUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_037 not in the Motif Atlas

Homologous match to IL_5TBW_031

Geometric discrepancy: 0.0589

The information below is about IL_5TBW_031

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

9BH5|1|A5|G|924
9BH5|1|A5|G|925
9BH5|1|A5|U|926
9BH5|1|A5|U|927
*
9BH5|1|A5|A|943
9BH5|1|A5|U|944
9BH5|1|A5|C|945

Current chains

Chain A5

28S rRNA

Nearby chains

Chain Cj

Ribosomal protein L37