IL_9BH5_044
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- CGGUAA*UCAAUG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BH5_044 not in the Motif Atlas
- Geometric match to IL_7A0S_027
- Geometric discrepancy: 0.1848
- The information below is about IL_7A0S_027
- Detailed Annotation
- 5x5 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_81631.1
- Basepair signature
- cWW-L-R-cSH-R-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
9BH5|1|A5|C|1046
9BH5|1|A5|G|1047
9BH5|1|A5|G|1048
9BH5|1|A5|U|1049
9BH5|1|A5|A|1050
9BH5|1|A5|A|1051
*
9BH5|1|A5|U|1106
9BH5|1|A5|C|1107
9BH5|1|A5|A|1108
9BH5|1|A5|A|1109
9BH5|1|A5|U|1110
9BH5|1|A5|G|1111
Current chains
- Chain A5
- 28S rRNA
Nearby chains
- Chain A7
- 5S ribosomal RNA; 5S rRNA
- Chain CD
- Large ribosomal subunit protein uL18
- Chain CF
- Large ribosomal subunit protein uL30
- Chain CI
- Large ribosomal subunit protein uL16
- Chain CS
- Large ribosomal subunit protein eL20
- Chain CT
- Large ribosomal subunit protein eL21
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