IL_9BH5_045

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

AA*UUU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_045 not in the Motif Atlas

Homologous match to IL_8C3A_042

Geometric discrepancy: 0.138

The information below is about IL_8C3A_042

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

9BH5|1|A5|A|1051
9BH5|1|A5|A|1052
*
9BH5|1|A5|U|1104
9BH5|1|A5|U|1105
9BH5|1|A5|U|1106

Current chains

Chain A5

28S rRNA

Nearby chains

Chain A7

5S ribosomal RNA; 5S rRNA

Chain CD

Large ribosomal subunit protein uL18

Chain CI

Large ribosomal subunit protein uL16

Chain CT

Large ribosomal subunit protein eL21