IL_9BH5_048

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

AGA*UAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_048 not in the Motif Atlas

Homologous match to IL_5TBW_042

Geometric discrepancy: 0.0991

The information below is about IL_5TBW_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

9BH5|1|A5|A|1063
9BH5|1|A5|G|1064
9BH5|1|A5|A|1065
*
9BH5|1|A5|U|1093
9BH5|1|A5|A|1094
9BH5|1|A5|U|1095

Current chains

Chain A5

28S rRNA

Nearby chains

Chain A7

5S ribosomal RNA; 5S rRNA

Chain CD

Large ribosomal subunit protein uL18

Chain CI

Large ribosomal subunit protein uL16