IL_9BH5_058

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

9BH5|1|A5|U|1260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_058 not in the Motif Atlas

Homologous match to IL_5TBW_053

Geometric discrepancy: 0.0978

The information below is about IL_5TBW_053

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

9BH5|1|A5|G|1259
9BH5|1|A5|U|1260
9BH5|1|A5|G|1261
*
9BH5|1|A5|C|1348
9BH5|1|A5|C|1349

Current chains

Chain A5

28S rRNA

Nearby chains

Chain A7

5S ribosomal RNA; 5S rRNA

Chain CH

Large ribosomal subunit protein uL6

Chain CS

Large ribosomal subunit protein eL20

Chain Cm

Ubiquitin-ribosomal protein eL40 fusion protein