IL_9BH5_071

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_071 not in the Motif Atlas

Geometric match to IL_5TBW_070

Geometric discrepancy: 0.1039

The information below is about IL_5TBW_070

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

9BH5|1|A5|C|1763
9BH5|1|A5|C|1764
*
9BH5|1|A5|G|1870
9BH5|1|A5|U|1871
9BH5|1|A5|G|1872

Current chains

Chain A5

28S rRNA

Nearby chains

Chain CR

Large ribosomal subunit protein eL19

Chain Cg

Large ribosomal subunit protein eL34