IL_9BH5_081

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CGUAAC*GGAAAAG

Length

13 nucleotides

Bulged bases

9BH5|1|A5|A|2024

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_081 not in the Motif Atlas

Geometric match to IL_7RQB_068

Geometric discrepancy: 0.0943

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9BH5|1|A5|C|2011
9BH5|1|A5|G|2012
9BH5|1|A5|U|2013
9BH5|1|A5|A|2014
9BH5|1|A5|A|2015
9BH5|1|A5|C|2016
*
9BH5|1|A5|G|2021
9BH5|1|A5|G|2022
9BH5|1|A5|A|2023
9BH5|1|A5|A|2024
9BH5|1|A5|A|2025
9BH5|1|A5|A|2026
9BH5|1|A5|G|2027

Current chains

Chain A5

28S rRNA

Nearby chains

Chain B2

Small subunit ribosomal RNA; SSU rRNA

Chain Cn

eL41

Chain Cp

Large ribosomal subunit protein eL43