IL_9BH5_083

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

UG*CGUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_083 not in the Motif Atlas

Homologous match to IL_8C3A_086

Geometric discrepancy: 0.3528

The information below is about IL_8C3A_086

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74125.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

9BH5|1|A5|U|2040
9BH5|1|A5|G|2041
*
9BH5|1|A5|C|2202
9BH5|1|A5|G|2203
9BH5|1|A5|U|2204
9BH5|1|A5|A|2205

Current chains

Chain A5

28S rRNA

Nearby chains

Chain AI

Small ribosomal subunit protein eS8

Chain CR

Large ribosomal subunit protein eL19