IL_9BH5_088

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CUGAAUG*CGCG

Length

11 nucleotides

Bulged bases

9BH5|1|A5|U|2312

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BH5|1|A5|C|2307
9BH5|1|A5|U|2308
9BH5|1|A5|G|2309
9BH5|1|A5|A|2310
9BH5|1|A5|A|2311
9BH5|1|A5|U|2312
9BH5|1|A5|G|2313
*
9BH5|1|A5|C|2338
9BH5|1|A5|G|2339
9BH5|1|A5|C|2340
9BH5|1|A5|G|2341

Current chains

Chain A5

28S rRNA

Nearby chains

Chain B2

Small subunit ribosomal RNA; SSU rRNA

Chain CA

Large ribosomal subunit protein uL2