IL_9BH5_090

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GUA*UUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_090 not in the Motif Atlas

Geometric match to IL_3SZX_002

Geometric discrepancy: 0.1058

The information below is about IL_3SZX_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

95

Unit IDs

9BH5|1|A5|G|2321
9BH5|1|A5|U|2322
9BH5|1|A5|A|2323
*
9BH5|1|A5|U|2328
9BH5|1|A5|U|2329
9BH5|1|A5|C|2330

Current chains

Chain A5

28S rRNA

Nearby chains

Chain Ci

Large ribosomal subunit protein eL36

Chain Co

Large ribosomal subunit protein eL42