IL_9BH5_096

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

9BH5|1|A5|A|2500, 9BH5|1|A5|C|3095

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_096 not in the Motif Atlas

Homologous match to IL_5TBW_092

Geometric discrepancy: 0.0664

The information below is about IL_5TBW_092

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_54678.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9BH5|1|A5|G|2499
9BH5|1|A5|A|2500
9BH5|1|A5|A|2501
*
9BH5|1|A5|U|3093
9BH5|1|A5|A|3094
9BH5|1|A5|C|3095
9BH5|1|A5|C|3096

Current chains

Chain A5

28S rRNA

Nearby chains

Chain CB

Large ribosomal subunit protein uL3

Chain CP

Large ribosomal subunit protein uL22