IL_9BH5_100
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- GUUAAAA*UCCU
- Length
- 11 nucleotides
- Bulged bases
- 9BH5|1|A5|U|2627, 9BH5|1|A5|C|2697, 9BH5|1|A5|C|2698
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BH5_100 not in the Motif Atlas
- Homologous match to IL_8C3A_106
- Geometric discrepancy: 0.2248
- The information below is about IL_8C3A_106
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74114.1
- Basepair signature
- cWW-cWS-cWW-L-R
- Number of instances in this motif group
- 2
Unit IDs
9BH5|1|A5|G|2625
9BH5|1|A5|U|2626
9BH5|1|A5|U|2627
9BH5|1|A5|A|2628
9BH5|1|A5|A|2629
9BH5|1|A5|A|2630
9BH5|1|A5|A|2631
*
9BH5|1|A5|U|2696
9BH5|1|A5|C|2697
9BH5|1|A5|C|2698
9BH5|1|A5|U|2699
Current chains
- Chain A5
- 28S rRNA
Nearby chains
- Chain A8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CA
- Large ribosomal subunit protein uL2
- Chain CG
- Large ribosomal subunit protein eL8
- Chain CX
- Large ribosomal subunit protein uL23B
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