IL_9BH5_101
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- GAAUUUCGAAGCAUUAAG*UGAC
- Length
- 22 nucleotides
- Bulged bases
- 9BH5|1|A5|U|2655, 9BH5|1|A5|U|2656, 9BH5|1|A5|C|2657, 9BH5|1|A5|G|2658, 9BH5|1|A5|A|2659, 9BH5|1|A5|A|2660, 9BH5|1|A5|U|2664, 9BH5|1|A5|U|2665
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9BH5|1|A5|G|2634
9BH5|1|A5|A|2635
9BH5|1|A5|A|2636
9BH5|1|A5|U|2637
9BH5|1|A5|U|2655
9BH5|1|A5|U|2656
9BH5|1|A5|C|2657
9BH5|1|A5|G|2658
9BH5|1|A5|A|2659
9BH5|1|A5|A|2660
9BH5|1|A5|G|2661
9BH5|1|A5|C|2662
9BH5|1|A5|A|2663
9BH5|1|A5|U|2664
9BH5|1|A5|U|2665
9BH5|1|A5|A|2666
9BH5|1|A5|A|2667
9BH5|1|A5|G|2668
*
9BH5|1|A5|U|2690
9BH5|1|A5|G|2691
9BH5|1|A5|A|2692
9BH5|1|A5|C|2693
Current chains
- Chain A5
- 28S rRNA
Nearby chains
- Chain CA
- Large ribosomal subunit protein uL2
- Chain CG
- Large ribosomal subunit protein eL8
- Chain CZ
- Large ribosomal subunit protein eL27
- Chain Cc
- Large ribosomal subunit protein eL30
- Chain Cg
- Large ribosomal subunit protein eL34
- Chain Cp
- Large ribosomal subunit protein eL43
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