IL_9BH5_109

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

AUC*GU

Length

5 nucleotides

Bulged bases

9BH5|1|A5|U|2884

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_109 not in the Motif Atlas

Geometric match to IL_4LFB_014

Geometric discrepancy: 0.31

The information below is about IL_4LFB_014

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

170

Unit IDs

9BH5|1|A5|A|2883
9BH5|1|A5|U|2884
9BH5|1|A5|C|2885
*
9BH5|1|A5|G|2899
9BH5|1|A5|U|2900

Current chains

Chain A5

28S rRNA

Nearby chains

Chain CL

Large ribosomal subunit protein eL13

Chain CQ

Large ribosomal subunit protein eL18

Chain Ca

Large ribosomal subunit protein uL15

Chain Co

Large ribosomal subunit protein eL42