IL_9BH5_111

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GCU*GAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_111 not in the Motif Atlas

Homologous match to IL_5TBW_103

Geometric discrepancy: 0.0906

The information below is about IL_5TBW_103

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

9BH5|1|A5|G|2936
9BH5|1|A5|C|2937
9BH5|1|A5|U|2938
*
9BH5|1|A5|G|2975
9BH5|1|A5|A|2976
9BH5|1|A5|U|2977

Current chains

Chain A5

28S rRNA

Nearby chains

Chain CI

Large ribosomal subunit protein uL16

Chain DB

Transfer RNA; tRNA