IL_9BH5_114
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- CCAAG*CGACG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BH5_114 not in the Motif Atlas
- Homologous match to IL_8C3A_114
- Geometric discrepancy: 0.1075
- The information below is about IL_8C3A_114
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65585.1
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
9BH5|1|A5|C|2947
9BH5|1|A5|C|2948
9BH5|1|A5|A|2949
9BH5|1|A5|A|2950
9BH5|1|A5|G|2951
*
9BH5|1|A5|C|2961
9BH5|1|A5|G|2962
9BH5|1|A5|A|2963
9BH5|1|A5|C|2964
9BH5|1|A5|G|2965
Current chains
- Chain A5
- 28S rRNA
Nearby chains
- Chain CI
- Large ribosomal subunit protein uL16
- Chain Cm
- Ubiquitin-ribosomal protein eL40 fusion protein
- Chain DB
- Transfer RNA; tRNA
Coloring options: