IL_9BH5_121

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

9BH5|1|A5|A|3083

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_121 not in the Motif Atlas

Geometric match to IL_7RQB_101

Geometric discrepancy: 0.0976

The information below is about IL_7RQB_101

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

9BH5|1|A5|C|3072
9BH5|1|A5|G|3073
*
9BH5|1|A5|C|3082
9BH5|1|A5|A|3083
9BH5|1|A5|G|3084

Current chains

Chain A5

28S rRNA

Nearby chains

Chain CA

Large ribosomal subunit protein uL2

Chain CI

Large ribosomal subunit protein uL16

Chain DA

Transfer RNA; tRNA

Chain DB

Transfer RNA; tRNA