IL_9BH5_128

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

UU*AAUG

Length

6 nucleotides

Bulged bases

9BH5|1|A5|A|3191, 9BH5|1|A5|U|3192

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_128 not in the Motif Atlas

Homologous match to IL_5TBW_119

Geometric discrepancy: 0.213

The information below is about IL_5TBW_119

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

9BH5|1|A5|U|3176
9BH5|1|A5|U|3177
*
9BH5|1|A5|A|3190
9BH5|1|A5|A|3191
9BH5|1|A5|U|3192
9BH5|1|A5|G|3193

Current chains

Chain A5

28S rRNA

Nearby chains

Chain CR

Large ribosomal subunit protein eL19

Chain Cd

Large ribosomal subunit protein eL31