IL_9BH5_138

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GUG*CUAUC

Length

8 nucleotides

Bulged bases

9BH5|1|A5|A|3489, 9BH5|1|A5|U|3490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_138 not in the Motif Atlas

Geometric match to IL_4PKD_001

Geometric discrepancy: 0.2585

The information below is about IL_4PKD_001

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

9BH5|1|A5|G|3440
9BH5|1|A5|U|3441
9BH5|1|A5|G|3442
*
9BH5|1|A5|C|3487
9BH5|1|A5|U|3488
9BH5|1|A5|A|3489
9BH5|1|A5|U|3490
9BH5|1|A5|C|3491

Current chains

Chain A5

28S rRNA

Nearby chains

Chain CB

Large ribosomal subunit protein uL3

Chain CW

Large ribosomal subunit protein eL24

Chain Cd

Large ribosomal subunit protein eL31