IL_9BH5_142

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CA*UUG

Length

5 nucleotides

Bulged bases

9BH5|1|A7|U|63

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_142 not in the Motif Atlas

Homologous match to IL_8C3A_143

Geometric discrepancy: 0.118

The information below is about IL_8C3A_143

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

112

Unit IDs

9BH5|1|A7|C|15
9BH5|1|A7|A|16
*
9BH5|1|A7|U|62
9BH5|1|A7|U|63
9BH5|1|A7|G|64

Current chains

Chain A7

5S rRNA

Nearby chains

Chain A5

Large subunit ribosomal RNA; LSU rRNA

Chain CD

Large ribosomal subunit protein uL18

Chain CI

Large ribosomal subunit protein uL16

Chain CJ

Large ribosomal subunit protein uL5B