IL_9BH5_155

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

UCAC*GG

Length

6 nucleotides

Bulged bases

9BH5|1|B2|C|104, 9BH5|1|B2|A|105

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_155 not in the Motif Atlas

Homologous match to IL_8C3A_400

Geometric discrepancy: 0.2324

The information below is about IL_8C3A_400

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.2

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

9BH5|1|B2|U|103
9BH5|1|B2|C|104
9BH5|1|B2|A|105
9BH5|1|B2|C|106
*
9BH5|1|B2|G|282
9BH5|1|B2|G|283

Current chains

Chain B2

18S rRNA

Nearby chains

Chain AE

Small ribosomal subunit protein eS4

Chain AI

Small ribosomal subunit protein eS8

Chain AL

Small ribosomal subunit protein uS17