IL_9BH5_158

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

UGC*GGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_158 not in the Motif Atlas

Geometric match to IL_3CZW_001

Geometric discrepancy: 0.1068

The information below is about IL_3CZW_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

61

Unit IDs

9BH5|1|B2|U|134
9BH5|1|B2|G|135
9BH5|1|B2|C|136
*
9BH5|1|B2|G|146
9BH5|1|B2|G|147
9BH5|1|B2|A|148

Current chains

Chain B2

18S rRNA

Nearby chains

Chain AG

Small ribosomal subunit protein eS6

Chain AY

Small ribosomal subunit protein eS24

Chain CW

Large ribosomal subunit protein eL24