IL_9BH5_162

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

UAGA*UG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_162 not in the Motif Atlas

Geometric match to IL_5Y58_001

Geometric discrepancy: 0.1561

The information below is about IL_5Y58_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37738.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

9BH5|1|B2|U|300
9BH5|1|B2|A|301
9BH5|1|B2|G|302
9BH5|1|B2|A|303
*
9BH5|1|B2|U|325
9BH5|1|B2|G|326

Current chains

Chain B2

18S rRNA

Nearby chains

Chain A5

Large subunit ribosomal RNA; LSU rRNA

Chain AI

Small ribosomal subunit protein eS8

Chain AL

Small ribosomal subunit protein uS17

Chain CR

Large ribosomal subunit protein eL19