IL_9BH5_163

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GAG*CGACUC

Length

9 nucleotides

Bulged bases

9BH5|1|B2|U|360

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_163 not in the Motif Atlas

Homologous match to IL_8C3A_412

Geometric discrepancy: 0.0918

The information below is about IL_8C3A_412

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49054.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

9BH5|1|B2|G|343
9BH5|1|B2|A|344
9BH5|1|B2|G|345
*
9BH5|1|B2|C|356
9BH5|1|B2|G|357
9BH5|1|B2|A|358
9BH5|1|B2|C|359
9BH5|1|B2|U|360
9BH5|1|B2|C|361

Current chains

Chain B2

18S rRNA

Nearby chains

Chain AE

Small ribosomal subunit protein eS4

Chain AJ

Small ribosomal subunit protein uS4

Chain AX

Small ribosomal subunit protein uS12