IL_9BH5_173

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

9BH5|1|B2|A|595

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_173 not in the Motif Atlas

Homologous match to IL_8C3A_426

Geometric discrepancy: 0.1053

The information below is about IL_8C3A_426

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.4

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

9BH5|1|B2|G|592
9BH5|1|B2|U|593
9BH5|1|B2|U|594
9BH5|1|B2|A|595
9BH5|1|B2|A|596
9BH5|1|B2|A|597
9BH5|1|B2|A|598
*
9BH5|1|B2|U|1063
9BH5|1|B2|C|1064

Current chains

Chain B2

18S rRNA

Nearby chains

Chain AX

Small ribosomal subunit protein uS12

Chain Aa

Small ribosomal subunit protein eS26