IL_9BH5_180

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_180 not in the Motif Atlas

Homologous match to IL_4V88_428

Geometric discrepancy: 0.0842

The information below is about IL_4V88_428

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.4

Basepair signature

cWW-cWW-tSH-cWW-R

Number of instances in this motif group

28

Unit IDs

9BH5|1|B2|A|829
9BH5|1|B2|G|830
*
9BH5|1|B2|C|927
9BH5|1|B2|A|928
9BH5|1|B2|U|929
9BH5|1|B2|U|930

Current chains

Chain B2

18S rRNA

Nearby chains

Chain AN

Small ribosomal subunit protein uS15

Chain AW

Ribosomal Protein, Small subunit

Chain Ab

Small ribosomal subunit protein eS27