IL_9BH5_181

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GGAC*GUCUU

Length

9 nucleotides

Bulged bases

9BH5|1|B2|C|924

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_181 not in the Motif Atlas

Homologous match to IL_8C3A_436

Geometric discrepancy: 0.0865

The information below is about IL_8C3A_436

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

9BH5|1|B2|G|831
9BH5|1|B2|G|832
9BH5|1|B2|A|833
9BH5|1|B2|C|834
*
9BH5|1|B2|G|922
9BH5|1|B2|U|923
9BH5|1|B2|C|924
9BH5|1|B2|U|925
9BH5|1|B2|U|926

Current chains

Chain B2

18S rRNA

Nearby chains

Chain AN

Small ribosomal subunit protein uS15

Chain Ab

Small ribosomal subunit protein eS27