IL_9BH5_197

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_197 not in the Motif Atlas

Geometric match to IL_4KYY_001

Geometric discrepancy: 0.1161

The information below is about IL_4KYY_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

95

Unit IDs

9BH5|1|B2|G|1172
9BH5|1|B2|U|1173
9BH5|1|B2|C|1174
*
9BH5|1|B2|G|1404
9BH5|1|B2|U|1405
9BH5|1|B2|C|1406

Current chains

Chain B2

18S rRNA

Nearby chains

Chain AK

Plectin/S10 N-terminal domain-containing protein

Chain AP

Small ribosomal subunit protein uS19

Chain Ad

Small ribosomal subunit protein uS14