3D structure

PDB id
9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
High-resolution C. elegans 80S ribosome structure - class 1
Experimental method
ELECTRON MICROSCOPY
Resolution
2.63 Å

Loop

Sequence
AUGACUG*CUCGAUUU
Length
15 nucleotides
Bulged bases
None detected
QA status
Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9BH5|1|B2|A|1183
9BH5|1|B2|U|1184
9BH5|1|B2|G|1188
9BH5|1|B2|A|1189
9BH5|1|B2|C|1190
9BH5|1|B2|U|1191
9BH5|1|B2|G|1192
*
9BH5|1|B2|C|1211
9BH5|1|B2|U|1212
9BH5|1|B2|C|1213
9BH5|1|B2|G|1214
9BH5|1|B2|A|1215
9BH5|1|B2|U|1216
9BH5|1|B2|U|1217
9BH5|1|B2|U|1218

Current chains

Chain B2
18S rRNA

Nearby chains

Chain AK
Plectin/S10 N-terminal domain-containing protein
Chain AM
Small ribosomal subunit protein eS12
Chain Ad
Small ribosomal subunit protein uS14
Chain Af
Ubiquitin-like protein 1-ribosomal protein eS31 fusion protein

Coloring options:

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