IL_9BH5_209

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GGGAUA*UUAAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_209 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.1212

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9BH5|1|B2|G|1496
9BH5|1|B2|G|1497
9BH5|1|B2|G|1498
9BH5|1|B2|A|1499
9BH5|1|B2|U|1500
9BH5|1|B2|A|1501
*
9BH5|1|B2|U|1522
9BH5|1|B2|U|1523
9BH5|1|B2|A|1524
9BH5|1|B2|A|1525
9BH5|1|B2|A|1526
9BH5|1|B2|C|1527

Current chains

Chain B2

18S rRNA

Nearby chains

Chain AS

Small ribosomal subunit protein uS13

Chain AT

Small ribosomal subunit protein eS19