IL_9BH5_210

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

9BH5|1|B2|C|1593, 9BH5|1|B2|A|1720

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_210 not in the Motif Atlas

Homologous match to IL_8C3A_470

Geometric discrepancy: 0.0758

The information below is about IL_8C3A_470

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

9BH5|1|B2|C|1592
9BH5|1|B2|C|1593
9BH5|1|B2|G|1594
*
9BH5|1|B2|C|1718
9BH5|1|B2|A|1719
9BH5|1|B2|A|1720
9BH5|1|B2|G|1721

Current chains

Chain B2

18S rRNA

Nearby chains

Chain Aa

Small ribosomal subunit protein eS26

Chain DA

Transfer RNA; tRNA

Chain DC

mRNA