IL_9BH5_217
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- AGAA*UUAU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BH5_217 not in the Motif Atlas
- Homologous match to IL_8C3A_478
- Geometric discrepancy: 0.0687
- The information below is about IL_8C3A_478
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.13
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 34
Unit IDs
9BH5|1|B2|A|1625
9BH5|1|B2|G|1626
9BH5|1|B2|A|1627
9BH5|1|B2|A|1628
*
9BH5|1|B2|U|1683
9BH5|1|B2|U|1684
9BH5|1|B2|A|1685
9BH5|1|B2|U|1686
Current chains
- Chain B2
- 18S rRNA
Nearby chains
- Chain A5
- Large subunit ribosomal RNA; LSU rRNA
- Chain AG
- Small ribosomal subunit protein eS6
- Chain AI
- Small ribosomal subunit protein eS8
- Chain CW
- Large ribosomal subunit protein eL24
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