IL_9BKD_005
3D structure
- PDB id
- 9BKD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of human Pdcd4 bound to the 40S small ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GAUUAAG*CGC
- Length
- 10 nucleotides
- Bulged bases
- 9BKD|1|A|A|46
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BKD_005 not in the Motif Atlas
- Homologous match to IL_4V88_387
- Geometric discrepancy: 0.0697
- The information below is about IL_4V88_387
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_77761.1
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
9BKD|1|A|G|41
9BKD|1|A|A|42
9BKD|1|A|U|43
9BKD|1|A|U|44
9BKD|1|A|A|45
9BKD|1|A|A|46
9BKD|1|A|G|47
*
9BKD|1|A|C|479
9BKD|1|A|G|480
9BKD|1|A|C|481
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain E
- Small ribosomal subunit protein uS12
Coloring options: