IL_9BKD_034
3D structure
- PDB id
- 9BKD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of human Pdcd4 bound to the 40S small ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- AG(OMG)GCAAG*CU
- Length
- 10 nucleotides
- Bulged bases
- 9BKD|1|A|G|600
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BKD_034 not in the Motif Atlas
- Homologous match to IL_8C3A_423
- Geometric discrepancy: 0.067
- The information below is about IL_8C3A_423
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.2
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 11
Unit IDs
9BKD|1|A|A|599
9BKD|1|A|G|600
9BKD|1|A|OMG|601
9BKD|1|A|G|602
9BKD|1|A|C|603
9BKD|1|A|A|604
9BKD|1|A|A|605
9BKD|1|A|G|606
*
9BKD|1|A|C|636
9BKD|1|A|U|637
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain D
- Small ribosomal subunit protein uS4
- Chain F
- Small ribosomal subunit protein eS30
- Chain L
- 40S ribosomal protein S2
- Chain U
- Programmed cell death protein 4
Coloring options: