IL_9BKD_040
3D structure
- PDB id
- 9BKD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of human Pdcd4 bound to the 40S small ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BKD_040 not in the Motif Atlas
- Homologous match to IL_8C3A_428
- Geometric discrepancy: 0.0837
- The information below is about IL_8C3A_428
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.5
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
9BKD|1|A|C|676
9BKD|1|A|G|677
9BKD|1|A|U|678
9BKD|1|A|A|679
9BKD|1|A|G|680
*
9BKD|1|A|U|1025
9BKD|1|A|C|1026
9BKD|1|A|A|1027
9BKD|1|A|A|1028
9BKD|1|A|G|1029
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain B
- Small ribosomal subunit protein uS17
- Chain E
- Small ribosomal subunit protein uS12
- Chain I
- 40S ribosomal protein S13
- Chain J
- 40S ribosomal protein S15a
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