IL_9BKD_041

3D structure

PDB id

9BKD (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of human Pdcd4 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BKD_041 not in the Motif Atlas

Homologous match to IL_4V88_423

Geometric discrepancy: 0.1142

The information below is about IL_4V88_423

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

19

Unit IDs

9BKD|1|A|A|802
9BKD|1|A|C|803
*
9BKD|1|A|G|860
9BKD|1|A|A|861
9BKD|1|A|A|862
9BKD|1|A|U|863

Current chains

Chain A

18S rRNA

Nearby chains

Chain B

Small ribosomal subunit protein uS17

Chain E

Small ribosomal subunit protein uS12

Chain G

Small ribosomal subunit protein eS7

Chain J

40S ribosomal protein S15a